PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G14280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 254aa    MW: 27392.6 Da    PI: 10.5033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G14280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-09148191447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      W+ +E+ +++ +  ++G+g W t ar++ k++t  q+ s+ qk+
  LPERR02G14280.1 148 WSVQEHSQFLLGLDKYGKGKWITLAREFVKTKTSIQIASHHQKF 191
                      ****************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717121161IPR001005SANT/Myb domain
SuperFamilySSF466893.23E-61359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-41559IPR009057Homeodomain-like
SuperFamilySSF466892.51E-12141197IPR009057Homeodomain-like
SMARTSM007170.0052144194IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.5E-8147193IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-6148193IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MHADAPAADP PPSAWTRRQD KLLEMLAWRW KPNPPWDRVA ALLGDKTPAQ ASDRYARLAD  60
ELRRLLVVQP VCDTAAPADG DAGGMMVLLP APTGVEVEAS ATTGVGDAAG PQASTSGAKA  120
RGYGSKLKPR RAPVKRKVGG VRKKPDIWSV QEHSQFLLGL DKYGKGKWIT LAREFVKTKT  180
SIQIASHHQK FCNRMKKREL NACKRTSIHD ITVPAVLPAE ATPAARPSIH NPALPAEVTP  240
AADDAIKSGV LICR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G14280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9VGB10.0A0A0D9VGB1_9ORYZ; Uncharacterized protein
STRINGLPERR02G14280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-18MYB family protein