PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G14620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 110aa    MW: 12016.6 Da    PI: 10.9779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G14620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.6e-214796255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa+a++aa+++++g
  LPERR02G14620.1 47 QYRGVRRRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAAAAYDAAALRFKG 96
                     6********.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-3346105IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2347106IPR016177DNA-binding domain
SMARTSM003809.0E-3447110IPR001471AP2/ERF domain
PfamPF008471.2E-144796IPR001471AP2/ERF domain
CDDcd000188.73E-1947105No hitNo description
PROSITE profilePS5103225.47547104IPR001471AP2/ERF domain
PRINTSPR003675.7E-124859IPR001471AP2/ERF domain
PRINTSPR003675.7E-127086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MRYHHPHDLP AAAARSSESH WLPPMGPSAA AAHAVEAQGA AAEMSRQYRG VRRRPWGKWA  60
AEIRDPNKAA RVWLGTFDTA EAAAAAYDAA ALRFKGSKAK LNFPDRVRIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2445107366ATERF1
3gcc_A3e-2445107366ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G14620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8313307e-94CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394454.22e-34ethylene-responsive transcription factor ERF114
SwissprotQ9FH544e-33EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0D9VGF01e-71A0A0D9VGF0_9ORYZ; Uncharacterized protein
STRINGLPERR02G14620.12e-72(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]