PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G14670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 235aa    MW: 24925 Da    PI: 4.8988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G14670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-183080155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++++g
  LPERR02G14670.1 30 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARAIRG 80
                     5799******.**********843...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.81E-213088No hitNo description
SuperFamilySSF541715.04E-213188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-283188IPR001471AP2/ERF domain
SMARTSM003809.9E-323194IPR001471AP2/ERF domain
PROSITE profilePS5103221.2593188IPR001471AP2/ERF domain
PfamPF008474.4E-113180IPR001471AP2/ERF domain
PRINTSPR003671.1E-83243IPR001471AP2/ERF domain
PRINTSPR003671.1E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDLYFFSSAP EKKATKRRQK QQQESGGNET RYLGVRRRPW GRYAAEIRDP ATKERHWLGT  60
FDTAEEAAIA YDRAARAIRG AAARTNFAFP DLPPGSSLTP YLSPDLSADD LHSQSHYASA  120
TGNGDNFVPA ALPAQDQYSH HHAAATAAAM APYGGGDAQM GSMGGNASGG GGAAWCDASE  180
LDFGGGYDDV DASAAAHGVY FEEGYVHSPM FSPMPAADEV GDGFQLGGSS SSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-182687971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11118KKATKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G14670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316423e-73AL731642.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23, complete sequence.
GenBankAP0149603e-73AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952596.11e-88ethylene-responsive transcription factor LEP
TrEMBLA0A0D9VGF61e-170A0A0D9VGF6_9ORYZ; Uncharacterized protein
STRINGLPERR02G14670.11e-171(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-24ERF family protein