PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G15930.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 224aa    MW: 22872.9 Da    PI: 11.2316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G15930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-1981130255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r +lg+f tae+Aa+a++aa+ +++g
  LPERR02G15930.1  81 RYRGVRRRR-WGKWAAEIRDPR----KaARLWLGTFATAEDAARAYDAAAIRFRG 130
                      7*****777.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.50181138IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2281139IPR016177DNA-binding domain
SMARTSM003802.5E-3581144IPR001471AP2/ERF domain
PfamPF008471.4E-1281130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3181139IPR001471AP2/ERF domain
PRINTSPR003677.3E-118293IPR001471AP2/ERF domain
CDDcd000184.42E-1389140No hitNo description
PRINTSPR003677.3E-11104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAALFEAAET AAIVAALTRV IADGRGGCAG AATVPPPAPS LIVPPAMGSV AVTESLSLVG  60
AVSSAGGHAG EASAATATAR RYRGVRRRRW GKWAAEIRDP RKAARLWLGT FATAEDAARA  120
YDAAAIRFRG SRAKLNFPED ACRLRRPATA PAPMPVAGSR CPCHGDDGSP PIAPRKVGFV  180
GGNGANGRWL GSWTVGPPPP SPSAAATLHR GVVHGSNGTE EGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2177138163ATERF1
3gcc_A4e-2177138163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G15930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624467.21e-48ethylene-responsive transcription factor ABR1
TrEMBLA0A0D9VGV51e-154A0A0D9VGV5_9ORYZ; Uncharacterized protein
STRINGLPERR02G15930.11e-154(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17401811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-12ERF family protein