PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G16450.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 204aa    MW: 22711.3 Da    PI: 6.4102
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G16450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-3371241128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGf+F P+deelvv++L++kv+  +++  ++i+++   +++Pw+L+ k+ +  ++wyfF++  +        +r+ ++gyW+  g d++v+s
  LPERR02G16450.1   7 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLPQRYNPWELNGKALQAGNQWYFFCHLTQ--------SRTSSNGYWNPIGADETVTS 91 
                      79*************************999.89**************966667789******9855........577889************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++vglkktL f  g+ ++g +t+W+mhey+l
  LPERR02G16450.1  92 -GGRNVGLKKTLLFSIGEPSEGIRTNWIMHEYHL 124
                      .99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-454167IPR003441NAC domain
PROSITE profilePS5100541.0767168IPR003441NAC domain
PfamPF023651.0E-218124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGGATNLPPG FHFFPSDEEL VVHFLRRKVS LLPCHPDIIP TLLPQRYNPW ELNGKALQAG  60
NQWYFFCHLT QSRTSSNGYW NPIGADETVT SGGRNVGLKK TLLFSIGEPS EGIRTNWIMH  120
EYHLLDGDCM AGGSGNSTSS SSNRKSHRKR GHSSMESNNW VLCRVFESSC GSQVSFHGEG  180
TELSCLDEVF LSLDDYDEVS LPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-33617316170NO APICAL MERISTEM PROTEIN
1ut4_B3e-33617316170NO APICAL MERISTEM PROTEIN
1ut7_A3e-33617316170NO APICAL MERISTEM PROTEIN
1ut7_B3e-33617316170NO APICAL MERISTEM PROTEIN
3swm_A4e-33617319173NAC domain-containing protein 19
3swm_B4e-33617319173NAC domain-containing protein 19
3swm_C4e-33617319173NAC domain-containing protein 19
3swm_D4e-33617319173NAC domain-containing protein 19
3swp_A4e-33617319173NAC domain-containing protein 19
3swp_B4e-33617319173NAC domain-containing protein 19
3swp_C4e-33617319173NAC domain-containing protein 19
3swp_D4e-33617319173NAC domain-containing protein 19
4dul_A3e-33617316170NAC domain-containing protein 19
4dul_B3e-33617316170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G16450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084540.0AK108454.1 Oryza sativa Japonica Group cDNA clone:002-143-C12, full insert sequence.
GenBankCT8313770.0CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647372.11e-134PREDICTED: NAC transcription factor 29-like isoform X2
SwissprotQ8GWK66e-62NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0D9VH211e-150A0A0D9VH21_9ORYZ; Uncharacterized protein
STRINGLPERR02G16450.11e-151(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-62xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]