PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G17070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 354aa    MW: 37940.3 Da    PI: 6.5095
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G17070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-18152206256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Le+ F+++++++ +++ +LA++l+L  rqV vWFqNrRa+ k
  LPERR02G17070.1 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLAERLNLRPRQVEVWFQNRRARTK 206
                      788899***********************************************98 PP
2HD-ZIP_I/II122.61.9e-39152241191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+ en+rL++ev+eLr +l
  LPERR02G17070.1 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLAERLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTLENRRLRREVAELR-AL 241
                      69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-18133206IPR009057Homeodomain-like
PROSITE profilePS5007117.265148208IPR001356Homeobox domain
SMARTSM003891.4E-16150212IPR001356Homeobox domain
SuperFamilySSF466898.55E-18150216IPR009057Homeodomain-like
PfamPF000461.2E-15152206IPR001356Homeobox domain
CDDcd000865.02E-17152209No hitNo description
PROSITE patternPS000270183206IPR017970Homeobox, conserved site
SMARTSM003405.7E-19208253IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-9208241IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MELELSLGDS PTPVKATVAP TPVPAPTCTS EGEGLQLVLG VRASRRDEQD DQTTCTQSSE  60
EAMEGEEDET RPRGEAPVES LSFPLFVSSA ETGSMNSEVC TRGFDVNTRP SDGCAAAVRP  120
SSPSSMLEVS TRQQATDQEA ADDEENSGGG ARKKLRLSKE QSSFLEDSFK EHSTLTPKQK  180
SDLAERLNLR PRQVEVWFQN RRARTKLKQT EVDCEHLKRC CERLTLENRR LRREVAELRA  240
LRTTPYPPLY GLHHHLPAVA TAGLAAAGGG GTVFRACPSC DHNSKVAAAA TCYSPHVVTS  300
VGAAPASDVT ATVASPATGS SPPASATLFS RRPHFGSFAA VVPPVLRRQP SATS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G17070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641180.0AK064118.1 Oryza sativa Japonica Group cDNA clone:002-102-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626174.11e-178homeobox-leucine zipper protein HOX7 isoform X1
SwissprotA2X6741e-179HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A0D9VHA60.0A0A0D9VHA6_9ORYZ; Uncharacterized protein
STRINGLPERR02G17070.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-36homeobox from Arabidopsis thaliana