PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G17380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 415aa    MW: 44241.1 Da    PI: 6.618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G17380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.1e-07173194223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  LPERR02G17380.1 173 FCDICGKGFRRDANLRMHMRAH 194
                      6*******************99 PP
2zf-C2H211.60.00086262286123
                      EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                      y+C+ C+  k+F    +L++H+r +
  LPERR02G17380.1 262 YSCERCDgkKRFAVLADLRSHLRHC 286
                      99********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-6168194No hitNo description
SMARTSM003550.0019172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614172194IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-6174194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM0035573224257IPR015880Zinc finger, C2H2-like
SMARTSM0035517262285IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MKPTTTNLLA GAGGSRGTVE YAVDPEPTLP MEGVEPSGTA IGVAGAGGGD ADPQAVLLRL  60
VALGDHMGAI RRRIASSLSG ESEPLSSAEI HSVSSEISST AHLIVLNAAS LLSATVPFPA  120
PAPVPILPAP LQEIPPVVSV AQEIPPKEAA KGDGDFDVVE LDASELLSEH VHFCDICGKG  180
FRRDANLRMH MRAHGDRFKT LDALSRPCQP RANAGGGAGR EVRFSCPYAG CNRNRAHRRF  240
RPLKSAVCAR NHFRRSHCPK LYSCERCDGK KRFAVLADLR SHLRHCGEEA QWRCSCGTTF  300
SRKDKLFGHL ALFEGHKPAV AEPNKGVVAA PAEASVSMME EGGVELNREQ EEDAQGGFDP  360
ESGWRSSEVL LLPPIGLSLQ KLDISSGAAR AIWDYGMKGC GQVAGKMDEE GVCEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G17380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056990.0AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648771.11e-178PREDICTED: protein indeterminate-domain 13-like
TrEMBLA0A0D9VHE00.0A0A0D9VHE0_9ORYZ; Uncharacterized protein
STRINGLPERR02G17380.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.15e-68C2H2 family protein