PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G20100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 250aa    MW: 27279.4 Da    PI: 8.3203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G20100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-51101391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF P+deel+++yL+kkv+++++   +++ evd++  ePw+Lp+ +k + +ewyfFs +d+kyatg+r+nratk+gyWkatgkd+ev  
  LPERR02G20100.1  10 LPPGFRFFPSDEELICHYLQKKVANEQIAKGSTLVEVDLHAREPWELPEVAKLTASEWYFFSFKDRKYATGSRTNRATKTGYWKATGKDREVRG 103
                      79*************************999889***************87778889************************************98 PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  ++++vg++ktLvfy+grap+g+kt Wvmhe+rl
  LPERR02G20100.1 104 SssSRAVVGMRKTLVFYQGRAPHGVKTGWVMHEFRL 139
                      8667778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-597158IPR003441NAC domain
PROSITE profilePS5100558.43210158IPR003441NAC domain
PfamPF023651.1E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MALKEIESTL PPGFRFFPSD EELICHYLQK KVANEQIAKG STLVEVDLHA REPWELPEVA  60
KLTASEWYFF SFKDRKYATG SRTNRATKTG YWKATGKDRE VRGSSSSRAV VGMRKTLVFY  120
QGRAPHGVKT GWVMHEFRLD SPHSPPREDW VLCRVFQKKK GDGDGCAQDS GGASSPTFTG  180
STSSSTHLQA PDHHHPAATA GGYCNIDLHA PGYSGTAGFT PTAIPAQPAA SQYQYGGAAL  240
GFPEDYGFGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-48515910169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G20100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648848.11e-126PREDICTED: NAC domain-containing protein 21/22-like
TrEMBLA0A0D9VII20.0A0A0D9VII2_9ORYZ; Uncharacterized protein
STRINGLPERR02G20100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.19e-76NAC domain containing protein 74