PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G20750.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 465aa    MW: 50489.5 Da    PI: 7.8616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G20750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19209259256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  LPERR02G20750.1 209 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 259
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.39E-33208268No hitNo description
SMARTSM003805.9E-39209272IPR001471AP2/ERF domain
PROSITE profilePS5103222.998209266IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23209267IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-32209267IPR001471AP2/ERF domain
PRINTSPR003678.4E-11210221IPR001471AP2/ERF domain
PfamPF008472.8E-12210259IPR001471AP2/ERF domain
PRINTSPR003678.4E-11232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDAVDRGGGA RGRGRRWKGK GVSAAETMQQ LPAPVLEDAP AAAALLRPVK KIRSPDRRLQ  60
RSVSSLSSAP ASPDSSSVSN PMSPPAMSLP NQQPPSTRHV FPFAYDPLAS SEPRLLPLLQ  120
YSSLYPQPVL PQQQSPLQHQ QMISFGSSQH QQQPPLFPPQ YLPPEEQQRL LLRYWSEALN  180
LSPRGVRGAG AVPPLLYQHL LRAPGPPKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD  240
TAEDAAMAYD REAFKLRGEN ARLNFPDLFL GKGRTGGSGR TSASAAAASC SSSSSSAPPT  300
PDESQTTQQA LQQQPQLNTE DLSNTEELKP LLSSAAEQDA IPEHEPNPQL QMADDQASDG  360
NTAMFQPSAT YGGGVWGPAD EAWFSAWGPG SSVWDYDMDS AHGLLLQSRF IGEQTGMDYA  420
YTAPEVLVAP APAAGTAMVA AASSSHLPPR PPPPRHHSPS FTWKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20208266463ATERF1
3gcc_A9e-20208266463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G20750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627619.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0D9VIR40.0A0A0D9VIR4_9ORYZ; Uncharacterized protein
STRINGLPERR02G20750.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.18e-37ERF family protein