PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G20990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family YABBY
Protein Properties Length: 250aa    MW: 26644.4 Da    PI: 8.0253
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G20990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY221.72.1e-68192095170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnveke 89 
                      s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      aa    + ++ ++         ll+e+ +++++l + + + 
  LPERR02G20990.1  19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPPAAPPANQLHFGPSllsptsphgLLDEMAFQTSSLLMEQASA 112
                      679*********************************************9977777776677777777777899995666665555555444332 PP

            YABBY  90 esa.stsvssekl.............senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                      + +  t +ss++              + +++ e+p+  p  v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ih
  LPERR02G20990.1 113 SLSgITGRSSSSCasnapamqmppakPVQQEPELPKNAPpsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 206
                      22101111111112223334558887788888898865557***************************************************** PP

            YABBY 168 fgl 170
                      fgl
  LPERR02G20990.1 207 FGL 209
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-7020209IPR006780YABBY protein
SuperFamilySSF470954.19E-8147202IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.7E-4158201IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSSSSSSAV FPLDHLASSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCANLL  60
SVNLRGLLLP PAAPPANQLH FGPSLLSPTS PHGLLDEMAF QTSSLLMEQA SASLSGITGR  120
SSSSCASNAP AMQMPPAKPV QQEPELPKNA PPSVNRPPEK RQRVPSAYNR FIKDEIQRIK  180
AGNPDISHRE AFSAAAKNWA HFPHIHFGLM PDQGFKKTFK PQDGSEDILL KDSLYAAAAA  240
AAANMGVNPF
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G20990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740160.0AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067840.0AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647599.11e-155PREDICTED: protein YABBY 4
SwissprotA2X7Q31e-145YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-145YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0D9VIU40.0A0A0D9VIU4_9ORYZ; Uncharacterized protein
STRINGLPERR02G20990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-62YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]