PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G21210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 249aa    MW: 27460.4 Da    PI: 4.7629
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G21210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-1852105456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  LPERR02G21210.1  52 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 105
                      458**************8899********************************9 PP
2HD-ZIP_I/II123.31.1e-3950143193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR++tkq+E+dy+aL+++ydal+++ e+L++++ +L+++++e
  LPERR02G21210.1  50 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRTKQIEHDYAALRAQYDALHARVESLKRDKLALAAQVDE 143
                      69*****************9999******************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1742109IPR009057Homeodomain-like
PROSITE profilePS5007117.23246107IPR001356Homeobox domain
SMARTSM003892.8E-1749111IPR001356Homeobox domain
PfamPF000461.7E-1552105IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1852114IPR009057Homeodomain-like
CDDcd000869.25E-1755108No hitNo description
PRINTSPR000316.0E-77887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000316.0E-787103IPR000047Helix-turn-helix motif
PfamPF021833.5E-16107148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MESDCQFLVP QPHMYYDTAA ADGAQFLQLQ QQMAAADYHA AGRGDGGGGE RKRRFTEEQV  60
RSLETTFHAR RAKLEPREKA ELARELGLQP RQVAIWFQNK RARWRTKQIE HDYAALRAQY  120
DALHARVESL KRDKLALAAQ VDELRGKLNE RQDQSGSCDG GGLAEGDDKK NIDRVNASSS  180
SCVVGEDVSF LAVPVVDVSE DASASAVGGG YGCDDDHGLD YVGGGLPEPF CATLDLWETW  240
PMVEWNAVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G21210.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-166AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankEU8475151e-166EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624138.11e-112homeobox-leucine zipper protein HOX24
SwissprotA2X7U11e-115HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A0D9VIX20.0A0A0D9VIX2_9ORYZ; Uncharacterized protein
STRINGLPERR02G21210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-33homeobox 7