PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G21480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 324aa    MW: 34494.3 Da    PI: 5.8137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G21480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-20142193256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  LPERR02G21480.1 142 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAVEAARAYDRAAFRMRGA 193
                      8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32141201IPR001471AP2/ERF domain
PROSITE profilePS5103224.263142200IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22142201IPR016177DNA-binding domain
PfamPF008474.0E-14142192IPR001471AP2/ERF domain
SMARTSM003801.6E-38142206IPR001471AP2/ERF domain
CDDcd000184.72E-32142201No hitNo description
PRINTSPR003671.9E-13143154IPR001471AP2/ERF domain
PRINTSPR003671.9E-13182202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDFTGEIDDF NLQLLHEQLL ADDPCLSVVD EYAAAQQCFH PAAFLPQQQQ QPAPAGYMEL  60
ANDQYNSGVS AGEAAFRAAA EPVMIRFGGE VPSPMTSDHR MPPQLTISLP PASHSHAAWA  120
ATAAHPALLQ AQAAADANDF RKYRGVRQRP WGKFAAEIRD PKKRGSRVWL GTYDTAVEAA  180
RAYDRAAFRM RGAKAILNFP NEVGSRGADF LAPPPPASHG KRKRHDAAAT AADPDVEVIG  240
ESPSSKSVKT EAYPSPASSS LASTTTSTVK SSSTSPSPSS EAACGGGDQL FASSWSWEQL  300
EGLFGSLSPL SAHPQMGFPE VTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-28143205668ATERF1
3gcc_A5e-28143205668ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G21480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624058.11e-115ethylene-responsive transcription factor 5
TrEMBLA0A0D9VJ190.0A0A0D9VJ19_9ORYZ; Uncharacterized protein
STRINGLPERR02G21480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-23ethylene responsive element binding factor 5