PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G21590.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 228aa    MW: 23572.9 Da    PI: 4.9162
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G21590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-184998255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  LPERR02G21590.1 49 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 98
                     69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3649112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3249106IPR001471AP2/ERF domain
PROSITE profilePS5103222.99849106IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2149106IPR016177DNA-binding domain
PfamPF008472.0E-124998IPR001471AP2/ERF domain
PRINTSPR003671.0E-105061IPR001471AP2/ERF domain
CDDcd000181.75E-2950106No hitNo description
PRINTSPR003671.0E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDDSSSFGSD LSSSSSGGNA PASPPSTAST SSSDAKKKRA RKEDGHHPTY RGVRMRSWGK  60
WVSEIREPRK KSRIWLGTFA TAEMAARAHD VAALAIKGRA AHLNFPGLAH ELPRPATAAP  120
KDVQAAAALA AAADFPPGAA SAANAAGADD NTDGGSDDVG SASASPSPPP PETTDDGLFD  180
LPDLLLDLRY GGPPSSCLSC ASSWDDNEVG LISGAGVFRL EEPLLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17471061272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G21590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194841.11e-81ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ73e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D9VJ351e-160A0A0D9VJ35_9ORYZ; Uncharacterized protein
STRINGLPERR02G21590.11e-161(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]