PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 240aa    MW: 27099 Da    PI: 10.0345
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.11.3e-301971254
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                     prlrWt eLH +Fv+a++ LGG++kAtPk+il+lm+v gLt++hvkSHLQ+YR
  LPERR02G22340.1 19 PRLRWTAELHLSFVRAIDCLGGQHKATPKHILQLMDVRGLTISHVKSHLQMYR 71
                     9**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1351575IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-281572IPR009057Homeodomain-like
SuperFamilySSF466891.68E-151671IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-231971IPR006447Myb domain, plants
PfamPF002491.9E-62071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGSGGRKGAA RQYNRSKEPR LRWTAELHLS FVRAIDCLGG QHKATPKHIL QLMDVRGLTI  60
SHVKSHLQMY RGTRLGIGQK DMQPELHDLK KHSFGSDEQN LKEFMCPPIK RAKVGTEASG  120
TYKCMQGSSD MMNAPPGTRY FIDDCTQLQE MPVDRTRRRS EHDGAAAARA PPAAASSNLQ  180
ALGFRVQGTS EEPFMVHQKC QEPGGQCGIY MLAQWYWHHR TSVYRTLPQM ALFFHRNTTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-171874258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-171874258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-171874258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-171874258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-171874258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-171874258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-171874258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-171874258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041607e-62AP004160.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1197_E09.
GenBankAP0041887e-62AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11.
GenBankAP0149587e-62AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126107e-62CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624520.12e-96uncharacterized protein LOC107276067
TrEMBLA0A0D9VJD00.0A0A0D9VJD0_9ORYZ; Uncharacterized protein
STRINGLPERR02G22340.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-29G2-like family protein