PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22640.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 334aa    MW: 35451.1 Da    PI: 8.84
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22640.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH223e-07108129426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++Crff++ G C+yG++C++ H+
  LPERR02G22640.2 108 RPCRFFLA-GDCSYGEKCRYPHS 129
                      79******.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8262854IPR000571Zinc finger, CCCH-type
SMARTSM003560.572953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5105129IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4108129IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4108129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.2E-26133316IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.66E-26135308IPR017986WD40-repeat-containing domain
SMARTSM003202.0E-6135174IPR001680WD40 repeat
PfamPF004006.3E-6139174IPR001680WD40 repeat
PROSITE profilePS5029414.134142304IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.118142183IPR001680WD40 repeat
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
SMARTSM00320470177212IPR001680WD40 repeat
SMARTSM003204.9214251IPR001680WD40 repeat
SMARTSM003200.072258295IPR001680WD40 repeat
PfamPF004000.1263294IPR001680WD40 repeat
PROSITE profilePS500829.239265304IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDIETDGRFG NKRVHNRLGP ANGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPEATTK  60
RSNHGGGGGN VWRNPNGGGG GRGSGGFNKW GRGPGGADGG PRHKAPDRPC RFFLAGDCSY  120
GEKCRYPHSY CMSDSITLLT PLQGHEKVVT GIALPAGSDK LYSGSKDGTV RMWDCQTGQC  180
AGVITMGREI GCMISEGPWL FVGIPDAVKV WNMQTQAEMN LTGPTGQVYA LAVGNELLFA  240
ATQDGRILAW RFSASTNAFE PAASLVGHQL AVVSLVVGAM RLYSGSMDKT IRVWAATESG  300
SLEVTYTHKE EHMPSVTVGT AAAVAIHLRP RAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-121393098320Tako8
6g6n_A3e-121393098320Tako8
6g6n_B3e-121393098320Tako8
6g6n_C3e-121393098320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22640.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023240.0AK102324.1 Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647681.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0D9VJH10.0A0A0D9VJH1_9ORYZ; Uncharacterized protein
STRINGLPERR02G22640.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-113zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]