PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRF
Protein Properties Length: 213aa    MW: 22462.3 Da    PI: 9.8368
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.51.6e-25133178146
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                      +++pgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+s
  LPERR02G22680.1 133 EPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEPS 178
                      699***************************************9975 PP
2QLQ52.31.7e-1868103237
              QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      a+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  LPERR02G22680.1  68 ALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103
                      79*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-567103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.22568103IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.8E-1168102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.686133177IPR014977WRC domain
PfamPF088794.8E-21134176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGEEKDGDSP QPPSKQPRLS SADPNAGVVT MAAPPPPVGL GLGLGLGGDS RGERDAETSP  60
ASANKTTALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVASSSF GPHRFPSLMG  120
LGNLCFDYRS SMEPDPGRCR RTDGKKWRCS RDVVPGHKYC ERHVHRGRGR SRKPVEPSAA  180
ATPANNGGGG SGIVFSPTSV LLAHGASAAA RAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347610.0CT834761.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033I10, full insert sequence.
GenBankFJ5466940.0FJ546694.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 10 (GRF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647685.11e-120PREDICTED: growth-regulating factor 10
SwissprotQ6EPP91e-119GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A0D9VJH91e-154A0A0D9VJH9_9ORYZ; Uncharacterized protein
STRINGLPERR02G22680.11e-155(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.13e-37growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]