PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22740.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 259aa    MW: 28458.1 Da    PI: 9.041
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22740.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-133579147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  LPERR02G22740.2 35 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 79
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.88E-172985IPR009057Homeodomain-like
PROSITE profilePS5129415.4083084IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-73385IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-183382IPR006447Myb domain, plants
SMARTSM007175.3E-113482IPR001005SANT/Myb domain
PfamPF002491.9E-113579IPR001005SANT/Myb domain
CDDcd001671.10E-83780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVSANQPPPD AAAGAASGDD ASKKVRKPYT ITKSRESWTE QEHDKFLEAL QLFDRDWKKI  60
EAFVGSKTVI QIRSHAQKYF LKVQKNGTSE HVPPPRPKRK AAHPYPQKAS KNEPGYNLKT  120
DSSSMLRNSG MNAAVSSWTH NSIPPIVASS MVKENLAAGV MGPNNFCSSS TEGPARAWQP  180
GETNDQINQV LSLRLMPDFA QVYSFLGSVF DPSTSGHLQK LKEMNPIDVE TALLLMRNLS  240
INLTSPDFED QVSSSPACL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22740.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880590.0AK288059.1 Oryza sativa Japonica Group cDNA, clone: J075153L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647688.21e-179PREDICTED: protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-97RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0D9VJI60.0A0A0D9VJI6_9ORYZ; Uncharacterized protein
STRINGLPERR02G22740.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-84MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]