PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G24020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ZF-HD
Protein Properties Length: 428aa    MW: 45788.9 Da    PI: 7.439
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G24020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.32.3e-30164218358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++rY+eC+kNhAa++G+h++DGCgEfmps+g+ + aaal CaACgCHR+FHRre++
  LPERR02G24020.1 164 AWRYRECQKNHAARMGAHVLDGCGEFMPSPGD-APAAALSCAACGCHRSFHRREPN 218
                      589**************************666.599*****************986 PP
2Homeobox17.28.8e-06312368153
                      TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +r Rt+ft++q e++ e+ +    + ++p+a++     +++g++ r+ kvW +N + 
  LPERR02G24020.1 312 KRFRTKFTADQKERMREFAHrvgwRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKH 368
                      789***********987655888779****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.3E-27165217IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-10165216IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-27166216IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.591167216IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.5E-19305369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-30306371IPR009057Homeodomain-like
TIGRFAMsTIGR015657.3E-26311367IPR006455Homeodomain, ZF-HD class
CDDcd000860.00571312365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEED EEEEDEEEQG HQHHQYTTAA AQQQQQQQMQ AHQVLGSSAS  60
SPSSLMDAAA FSRPMLPPNL SLVSPPPPPP PGTFMHAGHG HHGQGGRRGE STPPGGESQL  120
IQRQPARNGV LGGGGAHHPA TAAASTLALV VGGGRAGEGE AAPAWRYREC QKNHAARMGA  180
HVLDGCGEFM PSPGDAPAAA LSCAACGCHR SFHRREPNAV APPPPSSLPL SPAAATPNSS  240
GAGRLIPPPL LLAPPHMKRP PPPPPPPPPI SPASAPAALA DSPPPPHHHH HHSHAVAVVG  300
SASAPPAGPS KKRFRTKFTA DQKERMREFA HRVGWRIHKP DAAAVDAFCA QVGVSRRVLK  360
VWMHNNKHLA KTPPSPSPPP PPPQLLHHDP SPPPPPPPPP HHLHHHHHHH HHQNHTPQHH  420
QQQQQHDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-223103681674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G24020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4804963e-90AF480496.1 Oryza sativa clone BAC 49D11, complete sequence.
GenBankAP0053233e-90AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05.
GenBankAP0058443e-90AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16.
GenBankAP0149583e-90AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626824.11e-100zinc-finger homeodomain protein 7
SwissprotQ8S3Q91e-101ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A0D9VK090.0A0A0D9VK09_9ORYZ; Uncharacterized protein
STRINGLPERR02G24020.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-21homeobox protein 22