PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G25190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YB
Protein Properties Length: 160aa    MW: 17627.8 Da    PI: 5.6733
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G25190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB118.24e-3718109596
            NF-YB   5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                      +++lP+an++r+mkkv+P++ ki+  ak+++++c +ef+ fv++ea +k++ e+r+ti+++d+l ++ +lGf++y++p+++y++ yre+e++
  LPERR02G25190.1  18 NNELPMANLIRLMKKVIPGKVKIGGIAKGLTHNCTVEFVEFVGDEAFEKARGEHRRTIAPEDYLGSFRNLGFDHYIKPMETYIHGYREFERA 109
                      789**************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-2419113IPR009072Histone-fold
SuperFamilySSF471132.0E-2220133IPR009072Histone-fold
PfamPF008085.3E-122079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEAEKAVMGS DGEDGLTNNE LPMANLIRLM KKVIPGKVKI GGIAKGLTHN CTVEFVEFVG  60
DEAFEKARGE HRRTIAPEDY LGSFRNLGFD HYIKPMETYI HGYREFERAG GNRRVAPPTT  120
GTSLTPYGPT FTDAEIQFLR SVIPSPSDDK YNGSSPADNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A7e-22211051397NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G25190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649006.11e-76PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ6Z3482e-74NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBLA0A0D9VKG61e-115A0A0D9VKG6_9ORYZ; Uncharacterized protein
STRINGLPERR02G25190.11e-115(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136592631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.25e-18nuclear factor Y, subunit B6