PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G25240.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 294aa MW: 29872.3 Da PI: 9.1252

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G25240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	5.9e-39	44	102	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s LPERR02G25240.1 44 PEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRS 102 5789****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	41	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	46	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.329	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MQEFQSIPGL AGRLFGGAVT AAADIRRAQA QQGPAARCGG IPSPEAVKCP RCESTNTKFC 60 YYNNYNLSQP RHFCKSCRRY WTKGGVLRNV PVGGGCRKAK RSGGSSSSSS NSSAPSTPTA 120 AAATGDSTAK NQRRASASSP RSSSGGSGNT SPTAAAAAGA ATTPTTPATP SSNNTISVIS 180 HAKNTFPTDV PPPAPIFADQ AAAFASLFAP PPPPPLPVFS FAAQPKTEDG IASVLLAGGQ 240 TTAPPAAPPI VGDMTPFASL DTTGIFELGD VPAAAYWNAG NCWTDVPDPT VYLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G25240.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:11470159}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028132	1e-146	AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8.
GenBank	AK061000	1e-146	AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence.
GenBank	AK101321	1e-146	AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence.
GenBank	AP005284	1e-146	AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12.
GenBank	AP014958	1e-146	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-146	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647826.1	1e-123	PREDICTED: dof zinc finger protein DOF5.4-like
Swissprot	Q6Z345	1e-120	DOF4_ORYSJ; Dof zinc finger protein 4
TrEMBL	A0A0D9VKH2	0.0	A0A0D9VKH2_9ORYZ; Uncharacterized protein
STRING	LPERR02G25240.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-33	OBF binding protein 4

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]