PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G26470.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Nin-like

Protein Properties

Length: 172aa MW: 19818.9 Da PI: 8.2034

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G26470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.5	8.6e-26	50	100	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++++e +s+yF +pik+AA+eL v+lT+LK +CR +GI+RWP+Rk+ksl LPERR02G26470.1 50 EKTLTFELVSQYFCMPIKQAAQELTVGLTLLKSRCRALGIPRWPYRKVKSL 100 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.473	32	121	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-21	52	100	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MQSSFLQNEL DALFDGDILS ILDGREKQEQ KLESQKAMEL QCPSGHGSGE KTLTFELVSQ 60 YFCMPIKQAA QELTVGLTLL KSRCRALGIP RWPYRKVKSL QALIRNVQEL ATETGQDEKM 120 TMNTVEMLQQ TKKLMEQSPD VELDHWTKSL RQACFKENYK RRRLLADCMK NS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	163	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G26470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627113.1	2e-82	protein RKD1
Refseq	XP_015627115.1	2e-82	protein RKD1
Swissprot	Q9FGD1	1e-35	RKD3_ARATH; Protein RKD3
TrEMBL	A0A0D9VKZ2	1e-124	A0A0D9VKZ2_9ORYZ; Uncharacterized protein
STRING	LPERR02G26470.1	1e-125	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	6e-38	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]