PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G26590.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 88aa    MW: 9921.14 Da    PI: 9.335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G26590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.9e-0915541554
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +iN+ +++L++llP++ + +s   s    L+++++YIksL
  LPERR02G26590.1 15 EINELISKLQSLLPNSRRRGSSQASTTKLLKETCNYIKSL 54
                     7**************77899999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.258154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00521060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-101477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-101470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-61554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSRRSSRGS ISEEEINELI SKLQSLLPNS RRRGSSQAST TKLLKETCNY IKSLHREVDD  60
LSDRLSDLMS TMDHNSPGAE IIRSILRS
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G26590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1003051e-116FP100305.1 Phyllostachys edulis cDNA clone: bphyst024b19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624230.14e-55transcription factor ILI5
SwissprotA2X9L83e-56ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX03e-56ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A0D9VL105e-54A0A0D9VL10_9ORYZ; Uncharacterized protein
STRINGLPERR02G26590.18e-55(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.16e-15bHLH family protein