PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G27330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 19663.4 Da    PI: 9.1181
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G27330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fs tgkl  ++s
  LPERR02G27330.1  9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSATGKLSHFAS 59
                     79*********************************************9986 PP
2K-box56.89.4e-20841701598
            K-box  15 eslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        l+ e++k  + +e+L      +R++ Ge+Le Ls++eLqqLe+ Le +l ++  +K++ +++qi+elq+k  +l +en++Lr++ 
  LPERR02G27330.1  84 LDLNLEHSKYANLNEKLAeasLRLRQMRGEELEGLSIEELQQLEKSLEAGLHRVMLTKDQQFMAQINELQRKSTQLAQENMQLRNQA 170
                      445555566556666665444789************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.936161IPR002100Transcription factor, MADS-box
CDDcd002652.97E-38275No hitNo description
SuperFamilySSF554551.18E-29374IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-24323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.98586172IPR002487Transcription factor, K-box
PfamPF014862.8E-1791169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSA TGKLSHFASS  60
HMNEIIDKYN THSNNLGKAE QPSLDLNLEH SKYANLNEKL AEASLRLRQM RGEELEGLSI  120
EELQQLEKSL EAGLHRVMLT KDQQFMAQIN ELQRKSTQLA QENMQLRNQA AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19173173MEF2C
5f28_B4e-19173173MEF2C
5f28_C4e-19173173MEF2C
5f28_D4e-19173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G27330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033220.0AB003322.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:C50086.
GenBankAB1079570.0AB107957.1 Oryza sativa Japonica Group RMD1 mRNA for MADS domain protein, complete cds.
GenBankCT8345170.0CT834517.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA022M02, full insert sequence.
GenBankFJ7509380.0FJ750938.1 Oryza sativa clone KCS016G07 MADS-box transcription factor 22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624915.11e-112MADS-box transcription factor 22
SwissprotQ9XJ661e-113MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A0D9VLC01e-120A0A0D9VLC0_9ORYZ; Uncharacterized protein
STRINGLPERR02G27330.11e-121(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]