PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G27530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 220aa    MW: 23555 Da    PI: 5.1712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G27530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98e-21104155156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GVr+++ +g+W+AeIrdp+    r +r +lg+f+tae+Aa+a++ a+++++g+
  LPERR02G27530.1 104 SRYRGVRRRP-WGKWAAEIRDPR----RaARKWLGTFDTAEDAARAYDVAALEFRGH 155
                      79********.**********82....48**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-14104155IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-23104164IPR016177DNA-binding domain
SMARTSM003801.5E-36105168IPR001471AP2/ERF domain
PROSITE profilePS5103226.055105162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-32105163IPR001471AP2/ERF domain
CDDcd000186.47E-30106164No hitNo description
PRINTSPR003672.4E-11106117IPR001471AP2/ERF domain
PRINTSPR003672.4E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVPRLERPGS GFHLPNTEQE DSLFIRALIS VVSGDTTVPT IDSPAPADCD VLVSATAAGA  60
GSSSSDDEEE DEQESSGAAA LAASGGVGKR RRNRRSGGEG EGGSRYRGVR RRPWGKWAAE  120
IRDPRRAARK WLGTFDTAED AARAYDVAAL EFRGHRAKLN FPASSQAQQQ PRVLLGEKCG  180
SSASSPVPAP APAKARDQQE TWDGLQEIMM LDDGSFWSMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21103162363ATERF1
3gcc_A2e-21103162363ATERF1
5wx9_A3e-2197162472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G27530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-63CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.12e-98ethylene-responsive transcription factor ERF109
TrEMBLA0A0D9VLF11e-156A0A0D9VLF1_9ORYZ; Uncharacterized protein
STRINGLPERR02G27530.11e-157(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-18ERF family protein