PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G27720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 230aa    MW: 24658.4 Da    PI: 4.7145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G27720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-172372255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa  +l+g
  LPERR02G27720.1 23 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALICLKG 72
                     6*****998.**********9...336***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-282281IPR001471AP2/ERF domain
PROSITE profilePS5103221.722381IPR001471AP2/ERF domain
SMARTSM003801.9E-332387IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-182382IPR016177DNA-binding domain
CDDcd000181.50E-162383No hitNo description
PfamPF008479.5E-112372IPR001471AP2/ERF domain
PRINTSPR003675.4E-92435IPR001471AP2/ERF domain
PRINTSPR003675.4E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVKNGNNQQE AAAATARQRG MRQYKGVRMR SWGSWVSEIR APNQKTRIWL GSYSTAEAAA  60
RAYDAALICL KGSSAADLNF PVHLPFHIPA AAMSPKSIQR VAAAAAANAT TTTRPLQHHQ  120
FATAPASTTP PCSYGEMALS CSAASSPDEA AINYDYTDHD EMVAAAQYVG GDDDVDLAAL  180
ADIEAFFQSP KCMDYSMMDP CSTFFSPAPA AAAEWEDEGE ISLWSFSSIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G27720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041259e-55AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02.
GenBankAP0052879e-55AP005287.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_A11.
GenBankAP0149589e-55AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126109e-55CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878708.11e-93ethylene-responsive transcription factor ERF014
TrEMBLA0A0D9VLH41e-169A0A0D9VLH4_9ORYZ; Uncharacterized protein
STRINGLPERR02G27720.11e-170(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.12e-27ERF family protein