PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G27900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 573aa    MW: 60660.9 Da    PI: 4.8816
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G27900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-30330389159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  LPERR02G27900.1 330 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 389
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31315391IPR003657WRKY domain
SuperFamilySSF1182903.01E-27323391IPR003657WRKY domain
PROSITE profilePS5081128.529325391IPR003657WRKY domain
SMARTSM007741.4E-37330390IPR003657WRKY domain
PfamPF031061.0E-26331389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSSSKKKRAA IDLSLEADQR KAEERDAGDG VAMAEEDDDV KRAELAPKEE TGGEEKKKKV  60
VEVVVDQGED GSNEEIKYRT QQGEMMEKDK QPDQAANDDE HDDESDGAGA SPEEKHMVGE  120
EAAGEGDDSR TAMVQDELSE MQDEMERMKE ENRMLRRVYD KTVRDYYELQ MKLAAYQQKH  180
AADGPKETEV FLSLGDNGGF PATKSKERRR SAGSDDTDDD GKGDDDLGLS LRLGAPSSST  240
TSYEDDQKLQ IMEARHDVVD GAAAAATAMA GMKGSYALLE SSKVQHGAAG AAPAAAGELA  300
AAAGIASQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP  360
GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTTSSSSVS  420
DHLAAAPSSS YLSPYLLNSA SSSPLLMPGT GAAGAGAGMQ HLNLFGHSSP PSSSSILAHH  480
QQGTNSNKYP WSPNPPPLAG GGKRPFWSTG AGEEKATAAA ALPENVGAVM SDPNKFSAAI  540
AAAISNFMGK DGESSSSKSS SKWGVVESLP PHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22317393176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G27900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.10.0probable WRKY transcription factor 9
TrEMBLA0A0D9VLJ30.0A0A0D9VLJ3_9ORYZ; Uncharacterized protein
STRINGLPERR02G27900.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-51WRKY DNA-binding protein 9