PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G28410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 389aa    MW: 43887.9 Da    PI: 9.1347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G28410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-08272319347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v+++G g W+ I r        Rt  ++k++w+++
  LPERR02G28410.1 272 AWTLNEVVKLVDGVARFGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 319
                      7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-12263323IPR009057Homeodomain-like
PROSITE profilePS5129413.893265324IPR017930Myb domain
SMARTSM007179.1E-7269322IPR001005SANT/Myb domain
CDDcd116607.85E-18271321No hitNo description
SuperFamilySSF466898.58E-15271324IPR009057Homeodomain-like
PfamPF002492.0E-5272319IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRELQEAFRA TFGRQTTVKD KLWLKRRIAM GLSNSCDVPS SGCVVKDYKV IGMGAKQEIP  60
AVEGIPKMEL EATLVRDQVM DPVCERDLPP SFSYHSVEQQ RSSKRLKGIP TDYDEPQVTT  120
FAEQGTIKRI RKPTKRYIEE LSDIETHESI VRHSSPGKRL VYDEVFLRPR AAPLHEVDSL  180
STTYPTREDT LGGCSVHVPY VSRMRRGRPR STFIPFSDFE TSVECTEVPA ADGVNLEKEG  240
EQINHGLQDK DFCYDDSNPK IKQNGKRKHH RAWTLNEVVK LVDGVARFGA GKWSEIRRLA  300
FSSYSYRTSV DLKDKWRNLI RASQTQLSTE NDGVCPRKSN PSTIPIPPSI LLRVKELAEM  360
QPQAGDLTVP MKFSGQSTVV VQGKGSGFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G28410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703940.0AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence.
GenBankAK1024190.0AK102419.1 Oryza sativa Japonica Group cDNA clone:J033093D07, full insert sequence.
GenBankAK1048920.0AK104892.1 Oryza sativa Japonica Group cDNA clone:001-045-E03, full insert sequence.
GenBankFJ9402130.0FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625819.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625820.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625822.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625823.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625824.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625825.10.0uncharacterized protein LOC4330901 isoform X2
TrEMBLA0A0D9VLR10.0A0A0D9VLR1_9ORYZ; Uncharacterized protein
STRINGLPERR02G28410.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-62TRF-like 6