PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G28660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 212aa    MW: 22769.2 Da    PI: 7.0154
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G28660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-181970156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa   l+g+
  LPERR02G28660.1 19 KKYKGVRKRK-WGKWVSEIRLPNS---RDRIWLGSYDTPEKAARAFDAAFVTLRGH 70
                     59*****999.**********933...5********************98888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.54E-251982No hitNo description
SMARTSM003801.9E-292086IPR001471AP2/ERF domain
PfamPF008471.3E-102068IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-272082IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-182082IPR016177DNA-binding domain
PROSITE profilePS5103221.8122080IPR001471AP2/ERF domain
PRINTSPR003671.8E-92132IPR001471AP2/ERF domain
PRINTSPR003671.8E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MLPSPSSSSS SPASCDGEKK YKGVRKRKWG KWVSEIRLPN SRDRIWLGSY DTPEKAARAF  60
DAAFVTLRGH GAAGADLNFP DSPPPPSCGA RTSDPQLVQA AALSHANRRA RATPRHAAPP  120
PLSMATEECG FATAVRDDGS IDWRPVMAHP PPLYSPPGCW PGGSSNGAYD FLQAPPPASC  180
ADDGMDDVEE SGHGASASLW SFDTRDYSYF RY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1220801472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G28660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042572e-89AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149582e-89AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624935.16e-80ethylene-responsive transcription factor ERF018
TrEMBLA0A0D9VLU41e-151A0A0D9VLU4_9ORYZ; Uncharacterized protein
STRINGLPERR02G28660.11e-152(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-35ERF family protein