PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G29460.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 406aa MW: 40596.6 Da PI: 4.784

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G29460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.4e-12	218	263	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq LPERR02G29460.1 218 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-17	211	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	215	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.06E-13	217	267	No hit	No description
Pfam	PF00010	2.6E-9	218	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MQPNGREMHD DGSGGGGGGG GGGQIDFFDE MLSTLPPTVW SEHGGSGKII WELLTGGAGA 60 AAGGSDDHSA FDDSALLASR LRQHQIDGGG GGEDKPIMLQ LSDLQLRHGL SDAAGGEDGG 120 FLPLPLFTDR SSRDDIDAAF KSPNAAGADQ ALYNGFAAAM QPPPFGQGGS MPAQSFGGGA 180 AASGGGAAAA AGASSGGGAA APPRQRQRAR RGQATDPHSI AERLRRERIA ERMKALQELV 240 PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGASAV APLVANMSSE SNGNGNATSS 300 SGNGEAANGS SNGENGGDTM RVTEQQVAKL MEEDMGSAMQ YLQGKGLCLM PISLASAISS 360 ATSSSLLPRH GGGAGGTLHE GGNGASPPLV NGASGGGDDV GAGGKQ

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MQPNGREMHD DGSGGGGGGG GGGQIDFFDE MLSTLPPTVW SEHGGSGKII WELLTGGAGA  60
AAGGSDDHSA FDDSALLASR LRQHQIDGGG GGEDKPIMLQ LSDLQLRHGL SDAAGGEDGG  120
FLPLPLFTDR SSRDDIDAAF KSPNAAGADQ ALYNGFAAAM QPPPFGQGGS MPAQSFGGGA  180
AASGGGAAAA AGASSGGGAA APPRQRQRAR RGQATDPHSI AERLRRERIA ERMKALQELV  240
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGASAV APLVANMSSE SNGNGNATSS  300
SGNGEAANGS SNGENGGDTM RVTEQQVAKL MEEDMGSAMQ YLQGKGLCLM PISLASAISS  360
ATSSSLLPRH GGGAGGTLHE GGNGASPPLV NGASGGGDDV GAGGKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G29460.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003975	5e-98	AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBank	AP004094	5e-98	AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBank	AP014958	5e-98	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627343.1	1e-168	transcription factor bHLH66
Swissprot	Q9ZUG9	8e-78	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D9VM51	0.0	A0A0D9VM51_9ORYZ; Uncharacterized protein
STRING	LPERR02G29460.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	2e-41	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]