PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G29550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 677aa    MW: 73643.2 Da    PI: 6.97
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G29550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.72.9e-19210253145
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+
  LPERR02G29550.1 210 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVDKLTREN 253
                      79*******************.********************987 PP
2Response_reg79.31.3e-26231311109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++l+ +  
  LPERR02G29550.1  23 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAAIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGITH 114
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  LPERR02G29550.1 115 GACDYLLKPVRIEELRN 131
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.4E-1921677IPR017053Response regulator B-type, plant
SuperFamilySSF521728.54E-3520147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.0E-4120155No hitNo description
SMARTSM004486.2E-3121133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.85122137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.13E-2624136No hitNo description
SuperFamilySSF466895.02E-12208261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-20208261IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-16210253IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MRPEERKGVV ERRRDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTTT NQAAIALKML  60
RENRDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVLK GITHGACDYL  120
LKPVRIEELR NIWQHVVRRK FSTRDRANLD MYEECNKPPN ADPDQVHVHV TCGSDQSGRP  180
SKKRKEYCSD EEDEGEVNTQ ETDDPSAPKK PRVVWSVELH RKFVAAVNQL GIDKAVPKRI  240
LELMNVDKLT RENKYRLYLK RLSAVASQQV SIVAALGGRD PFLHMGAFEG LQGYQAFTSS  300
TALSSFTPHG LLNSPRNNSA ALGTQGVPAS KSIQTMSGSH TLSHSISDAK KYHLSVPGNQ  360
QGNLGQGLAS LGQTQMQQKW IHEETDDLST ILSGNGLANG MSGTLQSVTS SPLPPQELVE  420
CTQAKIGSQP SIQTSSVSSE HLEGAIGVSS SLLDSRVSQL SAIPLSGFSS NGLLIHGSFN  480
NNCTTKLGGT SSACTPVRSS NDLMVARDTK AGASAFGGAM LLPPDTEQKY LNFGGGNSLK  540
QKFDQRTANS LFDPKLVWNT VPSSQLATNV GAHHSPSQRW NNSNSNSTNI GARMIGQTTS  600
SASTVIPQMK TDFLISGDML MPKNSSDLSI PKLQSELSSS SCSFDGLLNS IVKVEKDDVT  660
FSDDLGCVDF YSLGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-19206263164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G29550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0995810.0AK099581.1 Oryza sativa Japonica Group cDNA clone:J013040N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625496.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A0D9VM610.0A0A0D9VM61_9ORYZ; Two-component response regulator
STRINGLPERR02G29550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-95response regulator 12