PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G30240.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 329aa MW: 35974.3 Da PI: 7.4961

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G30240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.9	8.4e-49	10	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF P+deelv++yL++kv +++ ++ ++ evd++++ePw+Lp +k +++ewyfFs rd+kyatg r+nratksgyWkatgk LPERR02G30240.1 10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagiaAGAAGTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGK 103 79******************99999787754344457***********87788999**************************** PP NAM 89 dkevlsk............kgel.........vglkktLvfykgrapkgektdWvmheyrl 128 d+ +++ + vg++ktLvfy+grap+g+kt+Wvmhe+r+ LPERR02G30240.1 104 DRVIHNPkypaaaasamaaG--GrhhrggasiVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 162 *987777766665551..0555666677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-57	7	181	IPR003441	NAC domain
PROSITE profile	PS51005	54.435	10	181	IPR003441	NAC domain
Pfam	PF02365	2.3E-27	11	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG IAAGAAGTMV EVDLHTHEPW 60 ELPDVAKLST NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHNP KYPAAAASAM 120 AAGGRHHRGG ASIVGMRKTL VFYRGRAPNG VKTNWVMHEF RMENPHTPPK EDWVLCRVFY 180 KKKADTETDQ YSSIMESDQT TDAVIAMART IKAAGASCYS NNSSSSHDHS PPPFPSYLAC 240 SSSGGAGGHH HRYQQQLLTP SLFGGGEIPA TTTSMALYSS IFDFSQHLDG GVAASTSAAG 300 SGIDGGGDQC GLMDLGIEEH YSYNGLMPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	1	187	4	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	1	187	4	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	1	187	4	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	1	187	4	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	1	187	7	173	NAC domain-containing protein 19
3swm_B	1e-45	1	187	7	173	NAC domain-containing protein 19
3swm_C	1e-45	1	187	7	173	NAC domain-containing protein 19
3swm_D	1e-45	1	187	7	173	NAC domain-containing protein 19
3swp_A	1e-45	1	187	7	173	NAC domain-containing protein 19
3swp_B	1e-45	1	187	7	173	NAC domain-containing protein 19
3swp_C	1e-45	1	187	7	173	NAC domain-containing protein 19
3swp_D	1e-45	1	187	7	173	NAC domain-containing protein 19
4dul_A	1e-45	1	187	4	170	NAC domain-containing protein 19
4dul_B	1e-45	1	187	4	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G30240.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060976	1e-105	AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence.
GenBank	AK070982	1e-105	AK070982.1 Oryza sativa Japonica Group cDNA clone:J023075A01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623778.1	1e-153	protein CUP-SHAPED COTYLEDON 1
Swissprot	Q9FLJ2	1e-59	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D9VMF7	0.0	A0A0D9VMF7_9ORYZ; Uncharacterized protein
STRING	LPERR02G30240.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	1e-76	NAC domain containing protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]