PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G31100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 194aa    MW: 20229.5 Da    PI: 4.526
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G31100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000284769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C + F++   L  H+++H
  LPERR02G31100.1 47 YNCTFCRRGFPTAQALGGHMNVH 69
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-64473No hitNo description
Gene3DG3DSA:3.30.160.606.2E-44572IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4714774IPR007087Zinc finger, C2H2
PfamPF139126.5E-64770IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSRREAGSTS KVDDDVGGGG GDVEETRVAG AGEDDEDDDE AGTRQPYNCT FCRRGFPTAQ  60
ALGGHMNVHR RDRVIGGRSA TTPSSSSSTA AAATRRSVSY DTFVGLFSSG QTRPPASGSG  120
CEEVTAAAGV RTPQELRLFG RDDGRREEGG GVRDRRDRYG WCSKDGGGDD GNGGGDQGEE  180
ELDLELRLGG SSGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G31100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955289.18e-24zinc finger protein 7
TrEMBLA0A0D9VMT51e-132A0A0D9VMT5_9ORYZ; Uncharacterized protein
STRINGLPERR02G31100.11e-133(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-12C2H2 family protein