PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G31580.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

TCP

Protein Properties

Length: 229aa MW: 23253.3 Da PI: 10.7658

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G31580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.7	4.8e-39	30	129	2	91
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++++s+++ LPERR02G31580.1 30 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSTTAASNASpfilg 123 789*************************************************************999998886666666666665555566666 PP TCP 89 ...kaa 91 +aa LPERR02G31580.1 124 krlRAA 129 555222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.8E-33	36	124	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	36	90	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MTTRPDGAAA AAAPDKQLVP AAPTTNGALA VRKAPSKDRH SKVDGRGRRI RMPIICAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STSSPSSLRS TTAASNASPF 120 ILGKRLRAAD DSPAPDLAAH PVAPTQGFWA LPARADFGQL WSFAAAPEMM VAAAAAPAMA 180 GEASAARVGN YLPMAQGNLN LLASFSGGPG GAGAAAAAAT GRAEEESAR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G31580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374835	4e-91	AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185649.1	7e-93	transcription factor TCP21-like
Swissprot	Q9FMX2	3e-73	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D9VMZ5	1e-159	A0A0D9VMZ5_9ORYZ; Uncharacterized protein
STRING	LPERR02G31580.1	1e-160	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-42	TCP family protein