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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR03G00340.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
GRAS |
| Protein Properties |
Length: 402aa MW: 43334.7 Da PI: 7.3343 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G00340.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 249.2 | 1.6e-76 | 49 | 401 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
v+++ ++A+ +sgdl +a+++L+r ++ +++p+ R a+yf AL+a l++ ++ pp ++++ ++ +l+a+k+fs++sP+l+f+h
LPERR03G00340.1 49 VDQVAQAAKLAESGDLFAARQILNRPPHRLPAAATPLLRSAFYFNDALRAALSS------SSPPPAASTPVDVLLKLTAYKAFSDASPVLRFAH 136
67899************************************************9......888999999999********************** PP
GRAS 96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
+t+ qa+l++++++ +++H++Dfdi G QW++L++ La R++ + +++T+++ +s++ el+ +++ L+ +A+ lgvpf+f v+ ++++
LPERR03G00340.1 137 FTCVQALLDELASSsaTCIHVLDFDIAVGDQWASLMHDLAHRRQH-AAFKLTALVTTASHHPLELHLLHHTLSTLAADLGVPFRFAVFNLDATD 229
**********999877999***********************765.89**********9****************************8555555 PP
GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpre 278
l ++ g+a+aV l + + vL+l+++l +++vv v++ +++++ +F++++++al+ + l+dsl+a +++
LPERR03G00340.1 230 LTALL--SLAAaGDAIAVRLPVGSVHAS------------VLHLLRRLGARLVVSVDRGwwCERGELPFAAHIMQALQSTAFLLDSLDAV-GTD 308
54444..44445*********9777764............*******************99999***********************998.89* PP
GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
s+ ++k+Er++++++i ++v +++a e+ + Wr+ l +aGF pv++s a++qa++ll+k++++g+r+e + gsl+l W++ L svSa
LPERR03G00340.1 309 SDVAAKIERFWVRPRIDDCVRAATAG---CGEKTAAWRATLASAGFVPVQVSGLAEAQAESLLKKMAVRGFRLERRGGSLFLHWQRGLLASVSA 399
**********************9998...788899*********************************************************** PP
GRAS 373 Wr 374
Wr
LPERR03G00340.1 400 WR 401
*8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MDNNHLYFHD PQQIMSPVHH DTKPPPFAAA AALPFEQPAS DDSSTAVVVD QVAQAAKLAE 60
SGDLFAARQI LNRPPHRLPA AATPLLRSAF YFNDALRAAL SSSSPPPAAS TPVDVLLKLT 120
AYKAFSDASP VLRFAHFTCV QALLDELASS SATCIHVLDF DIAVGDQWAS LMHDLAHRRQ 180
HAAFKLTALV TTASHHPLEL HLLHHTLSTL AADLGVPFRF AVFNLDATDL TALLSLAAAG 240
DAIAVRLPVG SVHASVLHLL RRLGARLVVS VDRGWWCERG ELPFAAHIMQ ALQSTAFLLD 300
SLDAVGTDSD VAAKIERFWV RPRIDDCVRA ATAGCGEKTA AWRATLASAG FVPVQVSGLA 360
EAQAESLLKK MAVRGFRLER RGGSLFLHWQ RGLLASVSAW RC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5b3g_A | 2e-21 | 54 | 400 | 25 | 378 | Protein SCARECROW |
| 5b3h_A | 2e-21 | 54 | 400 | 24 | 377 | Protein SCARECROW |
| 5b3h_D | 2e-21 | 54 | 400 | 24 | 377 | Protein SCARECROW |
| 5hyz_A | 2e-21 | 81 | 401 | 36 | 375 | GRAS family transcription factor containing protein, expressed |
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