PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G01310.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 195aa    MW: 20677.9 Da    PI: 4.4621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G01310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.2e-162474156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     + y+G+r +   g+Wv+eIr+p   gk+ r++lg++ ++e+Aa+a++ a+++l+g+
  LPERR03G01310.1 24 PVYRGIRLR--GGKWVSEIREP---GKSSRIWLGTYPSPEMAAAAYDVAALALRGA 74
                     68****976..5*********8...557*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-102473IPR001471AP2/ERF domain
PROSITE profilePS5103219.9152581IPR001471AP2/ERF domain
SMARTSM003808.8E-282587IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-182581IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-262581IPR001471AP2/ERF domain
CDDcd000186.15E-152681No hitNo description
PRINTSPR003672.9E-62637IPR001471AP2/ERF domain
PRINTSPR003672.9E-66383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDQEESLGVE PLTGRRVRAD TRHPVYRGIR LRGGKWVSEI REPGKSSRIW LGTYPSPEMA  60
AAAYDVAALA LRGADAALNF PGLATSSSRR PAPASASPDD IRAAAAAAAA SVIGSGNWDN  120
ARVDASTSRA EPEMDQKRVV DEDDVFEMPR LLVSMAEGLM MSPPRLSPAT DGGGGGVSPE  180
DDVDEEDGMS LWSHT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G01310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2365271e-72AC236527.1 Oryza minuta clone OM__Ba0059E04, complete sequence.
GenBankAC2365421e-72AC236542.1 Oryza minuta clone OM__Ba0185B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880266.13e-82ethylene-responsive transcription factor ERF027
RefseqXP_025880267.13e-82ethylene-responsive transcription factor ERF027
SwissprotQ9FJ908e-37ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0D9VNQ41e-135A0A0D9VNQ4_9ORYZ; Uncharacterized protein
STRINGLPERR03G01310.11e-135(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-24ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]