PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G01680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 312aa    MW: 34584.1 Da    PI: 6.2737
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G01680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-072622952154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp+++++++L +++gL+ +q+ +WF N+R +
  LPERR03G01680.1 262 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 295
                      469*****************************87 PP
2ELK25.43.3e-09216237122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L++++++++ ++++E++
  LPERR03G01680.1 216 ELKIELKQGFKSRIEDVREEIL 237
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.1E-164993IPR005540KNOX1
PfamPF037902.6E-145191IPR005540KNOX1
SMARTSM012562.0E-24104159IPR005541KNOX2
PfamPF037911.0E-18107158IPR005541KNOX2
PROSITE profilePS512139.132216236IPR005539ELK domain
PROSITE profilePS5007111.693236299IPR001356Homeobox domain
SuperFamilySSF466895.56E-16238302IPR009057Homeodomain-like
SMARTSM003894.9E-10238303IPR001356Homeobox domain
CDDcd000868.09E-12239300No hitNo description
Gene3DG3DSA:1.10.10.604.8E-25243302IPR009057Homeodomain-like
PfamPF059201.1E-17256295IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MHMQGGGGSL GTMEMGVGGF SGGGGECSSS SVTAAAAAAA AAAEAEERQL LKGEIAVHPM  60
CEQLVAAHVG CLRVATPIEH LPLIDAQLAQ SSGLLHSYAA HHRAFLSPHD KHELDSFLAQ  120
YMMLLCSFRE QLQQHVRVHA VEAVMACREI EQSLQDLTGA TLEEGTGATM SEDEDDTPML  180
ESPMDMGSDG GHDLMGFGPL MPTDSERSLM ERVRQELKIE LKQGFKSRIE DVREEILRKR  240
RAGKLPGDTT TILKQWWQQH SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHNN  300
SQTSTLKSKR KR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292311RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G01680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0618190.0AB061819.1 Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468611.20.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A0D9VNV80.0A0A0D9VNV8_9ORYZ; Uncharacterized protein
STRINGLPERR03G01680.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-143KNOTTED-like homeobox of Arabidopsis thaliana 7