PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G03690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 329aa    MW: 36596.1 Da    PI: 5.298
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G03690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.61.6e-2656158371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................................dvknkrRRiYDilNVLealnl 58 
                      +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                                     d+kn+rRR+YD+lNVL+a+++
  LPERR03G03690.1  56 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnnsilppdpdnpnavekydfpatnyfveslqqyDEKNIRRRVYDALNVLMAMEI 146
                      689*******...*****999************************************************************************* PP

          E2F_TDP  59 iekkekneirwkg 71 
                      i+k +k+ei+wkg
  LPERR03G03690.1 147 ISK-DKKEIQWKG 158
                      ***.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.0E-1251329IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.2E-4350163IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-3254158IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-175789IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-2457158IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-17125159IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.85E-40163266IPR014889Transcription factor DP, C-terminal
SMARTSM011381.4E-79165327IPR014889Transcription factor DP, C-terminal
PfamPF087811.4E-41165300IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.31E-41165286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAEASAAAGA GTPASENTFL RLNDLDIHGD DAPSSQAPTS KKKKRGARAV GPDKGGRGLR  60
QFSMKVCEKV ESKGRTTYNE VADELVAEFS DPNNSILPPD PDNPNAVEKY DFPATNYFVE  120
SLQQYDEKNI RRRVYDALNV LMAMEIISKD KKEIQWKGLP RTSINEIEDL QKELVGLKSR  180
IEKKNAYLQE LQDQFVGMQK LIQRNEQLYG SGNIPSSGVA LPFILVQTRP HATVEVEISE  240
DMQLVHFDFN STPFELHDDS YVLKAMSSCG EEQNDDIHDL IPNGGESSSM PNIYRQQMQQ  300
PARATNGTAR LPGSPPIPGI LKGRVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3548163193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G03690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245890.0AY224589.1 Oryza sativa (japonica cultivar-group) isolate 31182 E2F dimerization factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651049.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-126DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D9VPN40.0A0A0D9VPN4_9ORYZ; Uncharacterized protein
STRINGLPERR03G03690.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-128Transcription factor DP