PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G04270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 565aa    MW: 60852.2 Da    PI: 6.6942
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G04270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-083413781954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  LPERR03G04270.1 341 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 378
                      554459******************************88 PP
2BELL106.71.5e-34200271172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erq+lq+k + L  +le+Vd+rY++y++q+ +v ssF+avag g+a+pYt+lAl++iSrhFr+L+dai  q+
  LPERR03G04270.1 200 ERQDLQNKVTALTAMLEQVDRRYRHYHHQMLMVSSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGAQV 271
                      799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.0E-45133269IPR006563POX domain
PfamPF075266.4E-45138267IPR006563POX domain
PROSITE profilePS5007112.001319382IPR001356Homeobox domain
CDDcd000863.03E-12322383No hitNo description
SMARTSM003891.7E-9322386IPR001356Homeobox domain
SuperFamilySSF466894.28E-17323389IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27325388IPR009057Homeodomain-like
PfamPF059204.4E-17339378IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MATFFSTSTN QRDLTGSGAG AGEMSFHHHY PPPSNPYTSD SSAAGGGLIP LPATIVSQSH  60
IAHAVAGAGD DPTMDGGLQT QLLMATNGRH HQGGLSLSLG TQVPVSLYHQ YRSPASLLNP  120
TGQSPPSIAH PTTNNIYVQN SRFLKAARDL LDEVVNVRDA IKPKKDKDQS DAGDKAGDEI  180
KHDPDADNDK NTNPELTASE RQDLQNKVTA LTAMLEQVDR RYRHYHHQML MVSSSFDAVA  240
GAGAARPYTA LALQTISRHF RSLRDAIGAQ VQSTRRSLGE HDTSSGAGAG GGLSRLRYID  300
QQLRQQRAMQ QFGMMQQPQH AWRPQRGLPE SAVSVLRAWL FEHFLHPYPK DSEKLMLARQ  360
TGLSRGQVSN WFINARVRLW KPMIEEMYKE EFGAEMDSNS SSENKGKAEE APAISSEDRD  420
EPSFQSAPAA TSKHHHQQQQ INPFKSEAMA GAGMDAAAVA GIGMYATSLN LNHHHNSGYH  480
GGAGAGDARF MSYGDMADLG GGYDGVSLTL GLQHCNNNGA GAGGEQHGLL YGGGGGDFDY  540
LNGAGADVDR QRFSSSSQLL HDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17328385158Homeobox protein Meis1
4xrs_B4e-17328385158Homeobox protein Meis1
5bng_A5e-17328386159Homeobox protein Meis2
5bng_B5e-17328386159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G04270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649449.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_015691112.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A0D9VPW90.0A0A0D9VPW9_9ORYZ; Uncharacterized protein
STRINGLPERR03G04270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-103BEL1-like homeodomain 6