PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G04660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 349aa    MW: 37701.8 Da    PI: 6.7233
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G04660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18127180356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  LPERR03G04660.1 127 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 180
                      4568999**********************************************9 PP
2HD-ZIP_I/II129.41.4e-41126217192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L +++++L++e+ 
  LPERR03G04660.1 126 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALLSHNKKLQAEIV 217
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-1999183IPR009057Homeodomain-like
SuperFamilySSF466899.84E-20116184IPR009057Homeodomain-like
PROSITE profilePS5007117.022122182IPR001356Homeobox domain
SMARTSM003891.2E-17125186IPR001356Homeobox domain
CDDcd000866.59E-17127183No hitNo description
PfamPF000462.0E-15127180IPR001356Homeobox domain
PRINTSPR000311.2E-5153162IPR000047Helix-turn-helix motif
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5162178IPR000047Helix-turn-helix motif
PfamPF021833.6E-14182221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MASNGMASSP SSFFPPNFLL HMAQQQAAAA PTPTHHDLEE HHHHEQHHHH HHHLGLPPPA  60
PPPHPNHNPF LPSSQCQSLQ EFRGMAPMLS VGTKRPMYPE SAGEEMNGGG EDELSDDGSQ  120
AGGGGEKKRR LNVEQVRTLE KNFELGNKLE PERKMQLARA LGLQPRQVAI WFQNRRARWK  180
TKQLEKDYDA LKRQLDAVKA DNDALLSHNK KLQAEIVALK GSREAASELI NLNKETEASC  240
SNRSENSSEI NLDISRTPPA DGGGGGGMIP FYPSARPGAG AGAGVDIDHL LHTSSAAAKM  300
EHHGGGGGGG GGGNNVQASV DTASFGNLLC GAVDEPPPFW PWPDHQHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G04660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882341e-147BT088234.1 Zea mays full-length cDNA clone ZM_BFc0086K06 mRNA, complete cds.
GenBankJX4699551e-147JX469955.1 Zea mays subsp. mays clone UT3217 HB-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.11e-153homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-150HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A0D9VQ140.0A0A0D9VQ14_9ORYZ; Uncharacterized protein
STRINGLPERR03G04660.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-72HD-ZIP family protein