PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G04710.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 89aa    MW: 9843.07 Da    PI: 8.4983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G04710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-0816561554
                     HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
              HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                     +iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  LPERR03G04710.1 16 EINELISKLQALLPESSrSYGASRSSASKLLKETCSYIKSL 56
                     7**************664777777999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.159156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-91580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-91574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-51656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSRRGGGGG RITDEEINEL ISKLQALLPE SSRSYGASRS SASKLLKETC SYIKSLHREV  60
DNLSDRLSEL MSTMDNNSPQ AEIIRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G04710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416741e-94AK241674.1 Oryza sativa Japonica Group cDNA, clone: J065192H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649478.16e-42PREDICTED: transcription factor ILI3
SwissprotA2XD154e-38ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R474e-38ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A0D9VQ252e-55A0A0D9VQ25_9ORYZ; Uncharacterized protein
STRINGLPERR03G04710.14e-56(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-24bHLH family protein