PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G04860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 317aa    MW: 33553.5 Da    PI: 6.9002
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G04860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-192776255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a++ a+++l+g
  LPERR03G04860.1 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDDAARRLYG 76
                     69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.71E-282686No hitNo description
PROSITE profilePS5103222.5372784IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-212785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-302785IPR001471AP2/ERF domain
SMARTSM003802.7E-352790IPR001471AP2/ERF domain
PfamPF008473.0E-132776IPR001471AP2/ERF domain
PRINTSPR003673.1E-102839IPR001471AP2/ERF domain
PRINTSPR003673.1E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MESYGRKRGW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA  60
EEAALAYDDA ARRLYGPDAF LNLPHLRAAA SAAAHQRLRW LPASAVSASR AGGGGVAVPA  120
YGLLNLNAQH NVHVIHQRLQ ELKNSSSSPT KPPPPPRTNT TPPRTPAHLT PAMTNLPASS  180
PCSTVTNSVG SCFQALEQAM AMENAPPCCD GGAFGGDKPQ LDLKEFLQQI GVLKADDSDG  240
AAGKNGVHGD DGELADAFGF GGSGEFDWDA LAADMSDIAG GHHHGGALGV NGGYQMDDLH  300
EVEQFGGGCM PIPIWDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162884663ATERF1
3gcc_A2e-162884663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G04860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309128.11e-139dehydration-responsive element-binding protein 2E-like
SwissprotQ10R181e-140DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A0D9VQ440.0A0A0D9VQ44_9ORYZ; Uncharacterized protein
STRINGLPERR03G04860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-42ERF family protein