PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05310.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 108aa    MW: 11501.7 Da    PI: 6.4963
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.77.9e-143064133
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33
                     C  Cg +   Tp++Rrgp+g +tLCnaCG+ ++k 
  LPERR03G05310.1 30 CLRCGISAnaTPHMRRGPEGRRTLCNACGIAWAKD 64
                     6667766667**********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.38E-92364No hitNo description
SMARTSM004011.7E-52478IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-112964IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-113064IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MQFEDGGDVG VGVGAGEDGD RVRVDELTRC LRCGISANAT PHMRRGPEGR RTLCNACGIA  60
WAKDASVSNF HQQALHGGAQ GNQGYDPSAG MQQQQFIGSI RLNHETGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678072e-63AK067807.1 Oryza sativa Japonica Group cDNA clone:J013120L22, full insert sequence.
GenBankAK1011972e-63AK101197.1 Oryza sativa Japonica Group cDNA clone:J033030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633159.19e-35protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0D9VQB05e-74A0A0D9VQB0_9ORYZ; Uncharacterized protein
STRINGLPERR03G05310.18e-75(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.33e-12GATA-type zinc finger protein with TIFY domain