PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 327aa    MW: 35258.1 Da    PI: 5.5117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19112161255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a++  +++l+g
  LPERR03G05400.1 112 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 161
                      69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-32111170IPR001471AP2/ERF domain
PfamPF008472.9E-12112161IPR001471AP2/ERF domain
SMARTSM003802.6E-38112175IPR001471AP2/ERF domain
PROSITE profilePS5103223.446112169IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-22112170IPR016177DNA-binding domain
CDDcd000181.31E-28112168No hitNo description
PRINTSPR003674.3E-11113124IPR001471AP2/ERF domain
PRINTSPR003674.3E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MCGGAILAEF IPPPSRAAAA SKRVTAGHLW PAGCKNAGAG KSSKKQRHQR SFADIDDFEA  60
AFEQFDDDFD LDDVDDDEVD FVFTSKSPVA AGYDEGKTAR TAARKKKKGR RHFRGIRQRP  120
WGKWAAEIRD PHKGTRVWLG TFNTPEEAAR AYDVEARRLR GSKAKVNFPT TAAPAAARPR  180
RAAAKKQQQP PAMAGMKREL SPPETAAVPF FAGSFVDLTT TAAVAPPPPA SSFTDSFATS  240
ESGESLAKKM RTSDDSSEGS VGGGETMGFA DDLEFDPFML FQLPYSDGYE SIDSLFAGGD  300
AGSANNNDMS SVNLWSFDEF PIDGSAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21111169463ATERF1
3gcc_A6e-21111169463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630585.11e-126ethylene-responsive transcription factor ERF073
TrEMBLA0A0D9VQC20.0A0A0D9VQC2_9ORYZ; Uncharacterized protein
STRINGLPERR03G05400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-29ERF family protein