PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 278aa    MW: 29838.7 Da    PI: 5.0289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1870120155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y GVr+++ +g+W+AeIrdp+e     r++lg+f tae Aa a++aa++ l+g
  LPERR03G05410.1  70 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAESAALAYDAAARHLRG 120
                      79********.**********866...3***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1170120IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2170129IPR016177DNA-binding domain
CDDcd000183.45E-1870128No hitNo description
Gene3DG3DSA:3.30.730.102.8E-3071130IPR001471AP2/ERF domain
SMARTSM003806.3E-3271134IPR001471AP2/ERF domain
PROSITE profilePS5103223.01171128IPR001471AP2/ERF domain
PRINTSPR003671.6E-97283IPR001471AP2/ERF domain
PRINTSPR003671.6E-994110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MCGGAILANI IPTTPAASAA ARRVTVGNRR KVRDDDNDFD LEAAFQRFDR RRDDSHDEAK  60
KKKKSARPAS KYWGVRRRPW GKWAAEIRDP VEGVRVWLGT FATAESAALA YDAAARHLRG  120
DNSKLNFPSS SSTTRRRKRR NTVCAIAGED GHVATAQSPS SSVITSESSG ISSLPDFSWQ  180
GISADQPFAA AVELAGGDEE VITASSIDDN NNNSNNHSGA GDLLMFDDPF LFGDMFDDGG  240
ALFGASLMDG GDAGNNVNVA GESMMGLWSF GDDGTYYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1972128663ATERF1
3gcc_A5e-1972128663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14963RRRDDSHDEAKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0796331e-63AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence.
GenBankAP0149591e-63AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630586.11e-51ethylene-responsive transcription factor ERF073
TrEMBLA0A0D9VQC30.0A0A0D9VQC3_9ORYZ; Uncharacterized protein
STRINGLPERR03G05410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-18ethylene-responsive element binding protein