PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 239aa    MW: 26648.7 Da    PI: 10.0028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16139229199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v +  +l lp++f++++  + +++  +tl de+ ++++ ++    ++++  l++GW +F+ ++gL +gD  vF+l++ ++f  +v
  LPERR03G05580.1 139 FVKPMLHSHVVRGFWLGLPRHFCDTYL-P-KRDAIVTLVDEKDEEFSTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLIKPTTF--KV 224
                      89*********************9994.3.36679***************..566555..9***********************986777..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  LPERR03G05580.1 225 HIIRA 229
                      99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-19131230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-24132229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-25137228No hitNo description
PfamPF023622.9E-15139229IPR003340B3 DNA binding domain
SMARTSM010191.1E-18139230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758139230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAMAVEKSGG MSAYEAARER TVEENKRKME ALNLRHLSAA VAVAPKTPSP MKQKRRRIIE  60
AAVVAPSPPR RSRRLANLPE VKYAEVAPDG AERMKRSPRK PTDSIYLATH GSISMEARLE  120
AARKAEELEA QLDPEFPSFV KPMLHSHVVR GFWLGLPRHF CDTYLPKRDA IVTLVDEKDE  180
EFSTNYLAYK NGLSGGWAGF ALDHGLLDGD ATVFQLIKPT TFKVHIIRAT VGDRNEVAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220170.0AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633231.11e-161B3 domain-containing protein Os03g0184500
SwissprotQ10QS91e-162Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A0D9VQE61e-175A0A0D9VQE6_9ORYZ; Uncharacterized protein
STRINGLPERR03G05580.11e-176(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-46B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]