PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G05670.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

M-type_MADS

Protein Properties

Length: 91aa MW: 9751.1 Da PI: 10.7131

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G05670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.3	6.6e-26	32	80	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n rqvtfskRr g++KKAeELS+LCda+v +++fs tgkl+ ++ LPERR03G05670.1 32 RIDNLAARQVTFSKRRRGLFKKAEELSILCDADVGLVVFSATGKLFNFA 80 89*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	26.492	23	83	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.9E-32	23	82	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.28E-32	25	82	No hit	No description
PRINTS	PR00404	6.7E-25	25	45	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-24	25	83	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	25	79	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-25	32	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-25	45	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-25	60	81	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MAGRGGDGGG QPPQEGAAPA AAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL 60 CDADVGLVVF SATGKLFNFA NTRYTTTTCY S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-16	25	82	3	60	MEF2C
5f28_B	2e-16	25	82	3	60	MEF2C
5f28_C	2e-16	25	82	3	60	MEF2C
5f28_D	2e-16	25	82	3	60	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G05670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC229762	2e-81	AC229762.1 Oryza minuta clone OM__Ba0149B10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985436.1	7e-34	MADS-box transcription factor 47 isoform X1
Refseq	XP_004985437.1	7e-34	MADS-box transcription factor 47 isoform X1
Refseq	XP_004985438.1	7e-34	MADS-box transcription factor 47 isoform X1
Refseq	XP_004985439.1	7e-34	MADS-box transcription factor 47 isoform X1
Refseq	XP_012698351.1	7e-34	MADS-box transcription factor 47 isoform X2
Refseq	XP_015630610.1	1e-33	MADS-box transcription factor 47 isoform X1
Refseq	XP_015630611.1	1e-33	MADS-box transcription factor 47 isoform X2
Swissprot	Q5K4R0	8e-35	MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBL	A0A0D9VQG7	3e-59	A0A0D9VQG7_9ORYZ; Uncharacterized protein
STRING	LPERR03G05670.1	4e-60	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	2e-28	AGAMOUS-like 24

Publications ? help Back to Top
Lee S,Choi SC,An G Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J., 2008. 54(1): p. 93-105 [PMID:18182025] Lee S,Jeong DH,An G A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489]