PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 988aa    MW: 110744 Da    PI: 5.783
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.51.7e-55191362118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +f
  LPERR03G05920.1  19 LKEaQQRWLRPTEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINF 112
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhylevk
  LPERR03G05920.1 113 QRRSYWMLEEDYMHIVLVHYLEVK 136
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.11815141IPR005559CG-1 DNA-binding domain
SMARTSM010766.6E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.9E-6401486IPR013783Immunoglobulin-like fold
PfamPF018331.3E-6402479IPR002909IPT domain
SuperFamilySSF812969.97E-16402487IPR014756Immunoglobulin E-set
SuperFamilySSF484034.35E-17590694IPR020683Ankyrin repeat-containing domain
CDDcd002045.82E-14593691No hitNo description
Gene3DG3DSA:1.25.40.204.5E-18593701IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.79599631IPR002110Ankyrin repeat
PROSITE profilePS5029718.165599703IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-6604694IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843632664IPR002110Ankyrin repeat
SMARTSM002480.013632661IPR002110Ankyrin repeat
SMARTSM002481000671700IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-8803856IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.11805827IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261807835IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032807826IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022828850IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578829853IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4831850IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQQRWLRPT EICEILKNYR NFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKAGKL SSRGRGNDDI LQASCVDSPL SQLPSQTTEG ESSVSGQASE  180
YDETESGSYQ GLQATTPNTG FYSHGQEKLY VPLNETDFGT AFNGPNSQFD LSLWIETMKP  240
YKGTNQIPLY QALVPSEQSP FTEDQGIESF TFDEVYNNGL SIKDVGGDGT GGETPWQIPN  300
ASGSFATVDS FQQNEKTLEE AINPLLKTHS SSLSDILKDS FKKNDSFTRW MSKELAEVDD  360
SQITSSSGGY WNSEETDDII EASSSDQFTL GPVLAQDQLF SIVDFSPTWT YAGSKTRVFV  420
KGKILNSDEV KRFKWSCMFG EDEVPAEILA DETLMCYSPS HKPGRVPFYV TCSNRLACSE  480
VREFEFRTQY MDAPSPHGST NKTYLQMRLD KLLSLGQNEI QATLSNSTKE IIDLSKKINS  540
LMMNNDDWSE LLKLADDNEP ATDDKQDQFL QNRIKEKLYI WLLHKVGDGG KGPSVLDEEG  600
QGVLHLAAAL GYDWAIRPTI TAGVNINFRD AHGWTALHWA AFCGRERTVV ALIALGAAPG  660
AVTDPSPSFP TGNTPADLAS ANGHKGISGF LAESSLTSHL QTLNLKEAMR SSAAEISGLP  720
GIVNVADTST SPLAGESLQT GSMGDSLGAV RNAAQAAARI FQVFRMQSFQ RKQAVQYEDD  780
NGAISDERAM SLLSAKPSKP AQLDPVHAAA TRIQNKFRGW KGRKEFLLIR QRIVKIQAHV  840
RGHQVRKHYR KIIWSVGIVE KVILRWRRRG AGLRGFRPTE SAVTESTSSS SGDMTQNRPA  900
ENDYDFLQKG RKQTEERLQK ALARVKSMVQ YPDARDQYQR ILTAVTKMQE SQAMQEKMLE  960
ESTEMDEGLL MSEFKELWDD DMPTPGYF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631248.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0D9VQK30.0A0A0D9VQK3_9ORYZ; Uncharacterized protein
STRINGLPERR03G05920.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]