PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G06070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 534aa    MW: 59682.2 Da    PI: 6.326
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G06070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.78.3e-1271665342374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++++++c +av++ +    + l+++l++++s +g+p+qRl ay++e+L arl+++++ lyk+l+++e +   s e +++++l++e++P++kf++
  LPERR03G06070.1 166 KQVIVACGKAVDE-NGWYRDLLISELRNMVSISGEPIQRLGAYMLEGLVARLSSTGHALYKSLKCKEPT---SLELMSYMHLLYEICPFFKFGY 255
                      6788889998887.445567899*********************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN aI eav+ge+ vH+iDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s   +   l  +g+rL ++A++ g+pfefn+ v  + +
  LPERR03G06070.1 256 MSANGAIAEAVKGENFVHVIDFQIAQGSQWVTMIQALAARPGGPPYLRITGIDDSNSAhaRGGGLDIVGRRLYNIAQSYGLPFEFNA-VPAASH 348
                      ******************************************************8888889999***********************.799999 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++ le+L+++++E+++Vn+++qlh+++desv +e++rd++L++vk+lsP+vv++veqea++n+++F++r le+l+yy+a+f+++++  pr++++
  LPERR03G06070.1 349 EVMLEHLDIRSREVIVVNFAYQLHHTPDESVGIENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYLETLDYYTAMFEAIDVACPRDDKK 442
                      999******************************************************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl +aGF+p+pls  +++++k ll  ++s  y++ee++g+l+lgWkdr+Lv+ SaWr
  LPERR03G06070.1 443 RISTEQHCVARDIVNLIACEGAERVERHEVFGKWRARLAMAGFRPYPLSALVNSTIKKLLDSYHSY-YKLEERDGALYLGWKDRKLVVSSAWR 534
                      ****************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.678139515IPR005202Transcription factor GRAS
PfamPF035142.9E-124166534IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSMQASNRSY RYPNNSQIPY YSRNSMHVGQ NGAYCVQQNH EDLYVSSDDG SQNSNSKALV  60
FQAPYCTLDS SSGNFVYPAH SSTSSQYTSG SPISQQDSHS EHTSGSPLSA SCVTEVPGLR  120
FTTIEDIENA MFGPEPDTVS SDCSLLTALN QDNWREHLGI NTADLKQVIV ACGKAVDENG  180
WYRDLLISEL RNMVSISGEP IQRLGAYMLE GLVARLSSTG HALYKSLKCK EPTSLELMSY  240
MHLLYEICPF FKFGYMSANG AIAEAVKGEN FVHVIDFQIA QGSQWVTMIQ ALAARPGGPP  300
YLRITGIDDS NSAHARGGGL DIVGRRLYNI AQSYGLPFEF NAVPAASHEV MLEHLDIRSR  360
EVIVVNFAYQ LHHTPDESVG IENHRDRILR MVKGLSPRVV TLVEQEANTN TAPFFNRYLE  420
TLDYYTAMFE AIDVACPRDD KKRISTEQHC VARDIVNLIA CEGAERVERH EVFGKWRARL  480
AMAGFRPYPL SALVNSTIKK LLDSYHSYYK LEERDGALYL GWKDRKLVVS SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-581625341375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G06070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297540.0AC229754.2 Oryza minuta clone OM__Ba0173L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649543.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_006649544.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_015690825.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0D9VQM20.0A0A0D9VQM2_9ORYZ; Uncharacterized protein
STRINGLPERR03G06070.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]