PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G06460.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 533aa    MW: 55756.9 Da    PI: 8.5482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G06460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-055375123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  LPERR03G06460.1 53 FVCEICNKGFQRDQNLQLHRRGH 75
                     89*******************88 PP
2zf-C2H213.20.00027129151123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  LPERR03G06460.1 129 WKCDKCSKKYAVQSDWKAHTKTC 151
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-55275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.94E-75275No hitNo description
PROSITE profilePS5015710.9495375IPR007087Zinc finger, C2H2
PfamPF121718.6E-55375IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM0035521094124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.94E-7124149No hitNo description
SMARTSM00355140129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEVDTSSGSG AQQPQQPPQP PPAKKKRALP GMPDPDAEVI ALSPKTLLAT NRFVCEICNK  60
GFQRDQNLQL HRRGHNLPWK LRQRSGKEVR KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKKYAV QSDWKAHTKT CGSREYRCDC GTLFSRRDSF ITHRAFCDAL  180
AEESAKARAA PPAAADEDGT PASAAPPPPQ PPPPPPAPAP APAATPARVA QPEERDLAAA  240
PDQFTTPAPL PPPPPPPVAG AAPNECASSS SSGVGATSQS LLSSMFAPPS MAQPSQYSDP  300
IGVGGGSHQD QRAVPPKPPA LCLAPNASSS LFSAPVPADR QPQQFGPPPP PSPSPHMSAT  360
ALLQKAAQMG ATTSSSSFLR CLGLDMSSSS PAPASSSGQQ QQQQHHHHQE TMQVPIQATS  420
LPEWPPRLQP EPSPMLSSGL GLGLPYDATG GPVSLPELMM GQSSLFSAKP ATLDFLGLGV  480
SPTGASASRG FPAFMQPIGG AVGLAGSATG AAETFGAGQA NPWERNPSSS PIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35125186364Zinc finger protein JACKDAW
5b3h_F2e-35125186364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G06460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632656.10.0protein indeterminate-domain 1
SwissprotQ9LVQ71e-137IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A0D9VQS20.0A0A0D9VQS2_9ORYZ; Uncharacterized protein
STRINGLPERR03G06460.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]