PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G06520.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 242aa    MW: 26371.6 Da    PI: 6.9413
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G06520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-1964117356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  LPERR03G06520.1  64 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 117
                      56689***********************************************99 PP
2HD-ZIP_I/II113.71.2e-3664154292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e  +L+e+l+
  LPERR03G06520.1  64 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFSKLRSAHDAVVLQNCHLETELLKLKERLA 154
                      9**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-1754118IPR009057Homeodomain-like
SuperFamilySSF466897.35E-1758118IPR009057Homeodomain-like
PROSITE profilePS5007116.77959119IPR001356Homeobox domain
SMARTSM003891.6E-1662123IPR001356Homeobox domain
PfamPF000462.8E-1664117IPR001356Homeobox domain
CDDcd000861.97E-1564119No hitNo description
PRINTSPR000315.4E-69099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000315.4E-699115IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSREEDEKLL FPSFAFPDCF PEAVTSGGEQ KKARQRRRRR VKPEAAMAAA AAAAGESGGD  60
DQAKKRRLSD EQARFLEMSF KKERKLETPR KVQLAAELGL DAKQVAVWFQ NRRARHKSKL  120
MEEEFSKLRS AHDAVVLQNC HLETELLKLK ERLADVEEEK AKLAAAAAAA ATAGGGGGGN  180
SSPSSSSFST VTYHSALVGQ FGVEAAAAEE ADLTYMSEYA YTNYMLDLAA AGYCGGVYDQ  240
FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13041KKARQRRRRRVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G06520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734460.0AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649569.11e-122PREDICTED: homeobox-leucine zipper protein HOX12
SwissprotQ10QF21e-121HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLA0A0D9VQT11e-175A0A0D9VQT1_9ORYZ; Uncharacterized protein
STRINGLPERR03G06520.11e-175(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-31homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]